001、报错记录
合并gvcf使用脚本如下：
gatk CombineGVCFs -R GCF_001704415.2_ARS1.2_genomic.fna --variant gvcf.list -O test.g.vcf.gz
报错如下：
002、解决方法，设置内存上限可以解决上述报错：
gatk --java-options "-Xmx480g -Xms480g -XX:+UseSerialGC" CombineGVCFs -R GCF_001704415.2_ARS1.2_genomic.fna --variant gvcf.list -O cohort.g.vcf.gz
。
- OutOfMemoryError quot Exception thread spaceoutofmemoryerror quot exception thread unsatisfiedlinkerror quot exception thread classnotfoundexception quot exception thread outofmemoryerror内存space java outofmemoryerror内存permgen space assertionerror exception thread main quot exception rabbitmq reason bindingexception quot exception statement messagingexception quot exception connect version unsupportedclassversionerror quot exception